| Rank | Student-Athlete | Round Average | Year |
| 1 | Bobby Holden | 71.38# | 2013-14 |
| 2 | Bobby Holden | 71.60 | 2012-13 |
| 3 | Bobby Holden | 72.27 | 2014-15 |
| 4 | Jeremy Sanders | 73.04 | 2011-12 |
| 5 | Nick Obie | 73.18 | 2005 |
| 6 | John McCord | 73.36 | 2015-16 |
| 7 | John McCord | 73.46 | 2014-15 |
| 8 | Jeremy Gomberg | 73.52 | 2013-14 |
| 9 | Nick Obie | 73.52 | 2006 |
| 10 | Bobby Holden | 73.68 | 2011-12 |
| 11 | Joshua Fambro | 73.71 | 2021-22 |
| 12 | Ross Canavan | 73.83 | 2009 |
| 13 | Ross Canavan | 73.85 | 2008 |
| 14 | Anthony Estes | 74.00 | 2014-15 |
| 15 | Trevor Young | 74.05 | 2005 |
| 16 | Ross Canavan | 74.06 | 2010 |
| 17 | Jake Hollander | 74.07 | 2018-19 |
| 18 | Spencer Leader | 74.09 | 2021-22 |
| 19 | Alex Stroes | 74.15 | 2018-19 |
| 20 | EJ Stenftenagel | 74.19 | 2008 |
| 21 | Cade Lawson | 74.22 | 2017-18 |
| 22 | Jordan Bailey | 74.23 | 2003 |
| 23 | Alex Hedlund | 74.34 | 2011 |
| 24 | Nick Obie | 74.43 | 2004 |
| 25 | Jeremy Sanders | 74.50 | 2011 |
| 26 | R.J. Scholl | 74.71 | 2006 |
| 27 | R.J. Scholl | 75.00 | 2005 |
| 28 | Cade Lawson | 75.07 | 2018-19 |
| 29 | Matt Bussey | 75.13 | 2005 |
| 30 | Kyle Sharp | 75.22 | 2021-22 |
Updated through 2021-22 season
*Must have played at least five rounds
** Only includes seasons 2001-present
#Indicates NCAA Division III Individual National Champion
Note: In 2011-12, the men's golf team began playing a split season with events in the fall and the spring.